pixelflow
MapReduce for image data
Posts by Collection
portfolio
scivision
A toolkit for scientific image analysis
affinity-vae
Self-supervised method for disentanglement, clustering and classification of objects in multidimensional image data 
btrack
Bayesian multi-object tracking 
grace
Graph representation analysis for connected embeddings
publications
Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking
Published in Nature, 2010
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Importin-beta modulates the permeability of the nuclear pore complex in a Ran-dependent manner
Published in eLife, 2015
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Cyanobacteria use micro-optics to sense light direction
Published in eLife, 2016
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Local cellular neighborhood controls proliferation in cell competition
Published in Molecular Biology of the Cell, 2017
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Cell-scale biophysical determinants of cell competition in epithelia
Published in eLife, 2021
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Automated deep lineage tree analysis using a Bayesian single cell tracking approach
Published in Frontiers in Computer Science, 2021
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Affinity-VAE for disentanglement, clustering and classification of objects in multidimensional image data
Published in arXiv, 2022
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Learning biophysical determinants of cell fate with deep neural networks
Published in Nature Machine Intelligence, 2022
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Epithelioids: Self-sustaining 3D epithelial cultures to study long-term processes
Published in bioRxiv, 2023
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Learning dynamic image representations for self-supervised cell cycle annotation
Published in ICML, 2023
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Machine learning enhanced cell tracking
Published in Frontiers in Bioinformatics, 2023
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Virtual perturbations to assess explainability of deep-learning based cell fate predictors
Published in ICCV, 2023
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cellPLATO: an unsupervised method for identifying cell behaviour in heterogeneous cell trajectory data
Published in Journal of Cell Science, 2023
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Discovering interpretable models of scientific image data with deep learning
Published in CVPR, 2024
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Affinity-VAE: incorporating prior knowledge in representation learning from scientific images
Published in ECCV, 2024
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Spatial and temporal signatures of cell competition revealed by K-function analysis
Published in bioRxiv, 2024
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talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Introduction to Variational Autoencoders
Postgraduate, Alan Turing Institute, 2022
An introduction to Variational Autoencoders (VAE).
BIOC0037 - Biomolecular Structure and Function
Undergraduate, University College London, 2023
Tutorials.
BIOC00016 - Bioinformatics, Computational and Systems Biology
Undergraduate, University College London, 2023
Introduction to Machine Learning.
CELL0027 - Computational Cell Biophysics
Postgraduate, University College London, 2024
Introduction to Machine Learning.