 | Spatial and temporal signatures of cell competition revealed by K-function analysis Nathan Day, Jasmine Michalowska, Manasi Kelkar, Giulia Vallardi, Guillaume Charras, Alan Lowe Published in bioRxiv, November 2024 (see publication) Research themes: Type: Paper |
Selected publications
 | Affinity-VAE: incorporating prior knowledge in representation learning from scientific images Marjan Famili, Jola Mirecka , Camila Rangel Smith, Anna Kostanska, Nikolai Juraschko, Beatriz Costa-Gomes, Colin M. Palmer, Jeyan Thiyagalingam, Tom Burnley, Mark Basham, Alan Lowe Published in ECCV, August 2024 (see publication) Research themes: Type: Paper |
 | Discovering interpretable models of scientific image data with deep learning Christopher Soelistyo, Alan Lowe Published in CVPR, February 2024 (see publication) Research themes: Type: Paper |
 | cellPLATO: an unsupervised method for identifying cell behaviour in heterogeneous cell trajectory data Michael Shannon, Shira Eisman, Alan Lowe, Tyler Sloan, Emily Mace Published in Journal of Cell Science, October 2023 (see publication) Research themes: Type: Paper |
 | Virtual perturbations to assess explainability of deep-learning based cell fate predictors Christopher Soelistyo, Guillaume Charras, Alan Lowe Published in ICCV, July 2023 (see publication) Research themes: Type: Paper |
 | Machine learning enhanced cell tracking Christopher Soelistyo, Kristina Ulicna, Alan Lowe Published in Frontiers in Bioinformatics, July 2023 (see publication) Research themes: Type: Paper |
 | Learning dynamic image representations for self-supervised cell cycle annotation Kristina Ulicna, Manasi Kelkar, Christopher Soelistyo, Guillaume Charras, Alan Lowe Published in ICML, May 2023 (see publication) Research themes: Type: Paper |
 | Epithelioids: Self-sustaining 3D epithelial cultures to study long-term processes Albert Herms, David Fernandez-Antoran, Maria Alcolea, Argyro Kalogeropoulou, Ujjwal Banerjee, Gabriel Piedrafita, Emilie Abby, Jose Valverde-Lopez, Ines Ferreira, Stefan Dentro, Swee Ong, Bartomeu Colom, Kasumi Murai, Charlotte King, Krishnaa Mahbubani, Kourosh Saeb-Parsy, Alan Lowe, Moritz Gerstung, Philip Jones Published in bioRxiv, January 2023 (see publication) Research themes: Type: Paper |
 | Learning biophysical determinants of cell fate with deep neural networks Christopher Soelistyo, Giulia Vallardi, Guillaume Charras, Alan Lowe Published in Nature Machine Intelligence, June 2022 (see publication) Research themes: Type: Paper |
 | Affinity-VAE for disentanglement, clustering and classification of objects in multidimensional image data Jola Mirecka, Marjan Famili, Anna Kotańska, Nikolai Juraschko, Beatriz Costa-Gomes, Colin Palmer, Jeyan Thiyagalingam, Tom Burnley, Mark Basham, Alan Lowe Published in arXiv, January 2022 (see publication) Research themes: Type: Paper |
 | Automated deep lineage tree analysis using a Bayesian single cell tracking approach Kristina Ulicna, Giulia Vallardi, Guillaume Charras, Alan Lowe Published in Frontiers in Computer Science, October 2021 (see publication) Research themes: Type: Paper |
 | Cell-scale biophysical determinants of cell competition in epithelia Daniel Gradeci, Anna Bove, Giulia Vallardi, Alan Lowe, Shiladitya Banerjee, Guillaume Charras Published in eLife, May 2021 (see publication) Research themes: Type: Paper |
 | Local cellular neighborhood controls proliferation in cell competition Anna Bove, Daniel Gradeci, Yasuyuki Fujita, Shiladitya Banerjee, Guillaume Charras, Alan Lowe Published in Molecular Biology of the Cell, November 2017 (see publication) Research themes: Type: Paper |
 | Cyanobacteria use micro-optics to sense light direction Nils Schuergers, Tchern Lenn, Ronald Kampmann, Markus Meissner, Tiago Esteves, Maja Temerinac-Ott, Jan Korvink, Alan Lowe, Conrad Mullineaux, Annegret Wilde Published in eLife, February 2016 (see publication) Research themes: Type: Paper |
 | Importin-beta modulates the permeability of the nuclear pore complex in a Ran-dependent manner Alan Lowe, Jeffrey Tang, Jaime Yassif, Michael Graf, William Huang, Jay Groves, Karsten Weis, Jan Liphardt Published in eLife, March 2015 (see publication) Research themes: Type: Paper |
 | Selectivity mechanism of the nuclear pore complex characterized by single cargo tracking Alan Lowe, Jake Siegel, Petr Kalab, Merek Siu, Karsten Weis, Jan Liphardt Published in Nature, September 2010 (see publication) Research themes: Type: Paper |